Detailed information of SNP:
|
SNP ID:
sf0116969089(Gbrowse)
Chromosome: chr01 Position: 16969089 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 94.23% | 5.77% |
| All Indica | 796 | 98.24% | 1.76% |
| All Japonica | 487 | 87.27% | 12.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 88 | 46.59% | 53.41% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0116969089 | C->T | LOC_Os01g31020(LOC_Os01g31020.1) | INTRON |