Detailed information of SNP:
|
SNP ID:
sf0117017867(Gbrowse)
Chromosome: chr01 Position: 17017867 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.11% | 41.89% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117017867 | G->A | INTERGENIC | None |