Detailed information of SNP:
|
SNP ID:
sf0117038511(Gbrowse)
Chromosome: chr01 Position: 17038511 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 57.26% | 42.74% |
| All Indica | 788 | 92.64% | 7.36% |
| All Japonica | 494 | 2.43% | 97.57% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 332 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117038511 | A->G | LOC_Os01g31160(LOC_Os01g31160.1) | INTRON |