Detailed information of SNP:
|
SNP ID:
sf0117056992(Gbrowse)
Chromosome: chr01 Position: 17056992 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 97.86% | 2.14% |
| All Indica | 785 | 96.43% | 3.57% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 99.73% | 0.27% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117056992 | C->T | LOC_Os01g31190(LOC_Os01g31190.1) | Non-Synonymous SNP |