Detailed information of SNP:
|
SNP ID:
sf0117059502(Gbrowse)
Chromosome: chr01 Position: 17059502 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1240 | 74.27% | 25.73% |
| All Indica | 769 | 98.31% | 1.69% |
| All Japonica | 357 | 27.17% | 72.83% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 188 | 96.81% | 3.19% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 230 | 32.17% | 67.83% |
| Tropical Japonica | 80 | 11.25% | 88.75% |
| Japonica Intermediate | 47 | 29.79% | 70.21% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117059502 | T->C | LOC_Os01g31200(LOC_Os01g31200.1) | Non-Synonymous SNP |