Detailed information of SNP:
|
SNP ID:
sf0117091295(Gbrowse)
Chromosome: chr01 Position: 17091295 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 96.15% | 3.85% |
| All Indica | 762 | 93.96% | 6.04% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 362 | 96.69% | 3.31% |
| Indica II | 193 | 94.82% | 5.18% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117091295 | A->G | LOC_Os01g31250(LOC_Os01g31250.1) | Synonymous |