Detailed information of SNP:
|
SNP ID:
sf0117127715(Gbrowse)
Chromosome: chr01 Position: 17127715 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 95.36% | 4.64% |
| All Indica | 747 | 93.31% | 6.69% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 62 | 90.32% | 9.68% |
| Indica I | 346 | 93.35% | 6.65% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 195 | 90.77% | 9.23% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117127715 | A->C | INTERGENIC | None |