Detailed information of SNP:
|
SNP ID:
sf0117136336(Gbrowse)
Chromosome: chr01 Position: 17136336 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 52.93% | 47.07% |
| All Indica | 783 | 86.97% | 13.03% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 202 | 74.75% | 25.25% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117136336 | T->C | LOC_Os01g31320(LOC_Os01g31320.1) | Synonymous |