Detailed information of SNP:
|
SNP ID:
sf0117140965(Gbrowse)
Chromosome: chr01 Position: 17140965 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 97.89% | 2.11% |
| All Indica | 754 | 96.15% | 3.85% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 93.73% | 6.27% |
| Indica II | 204 | 98.04% | 1.96% |
| Indica Intermediate | 199 | 98.49% | 1.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117140965 | C->A | INTERGENIC | None |