Detailed information of SNP:
|
SNP ID:
sf0117244420(Gbrowse)
Chromosome: chr01 Position: 17244420 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1292 | 97.45% | 2.55% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 372 | 91.94% | 8.06% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 239 | 88.28% | 11.72% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 96.15% | 3.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117244420 | G->A | INTERGENIC | None |