Detailed information of SNP:
|
SNP ID:
sf0117281671(Gbrowse)
Chromosome: chr01 Position: 17281671 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 71.40% | 28.60% |
| All Indica | 722 | 51.39% | 48.61% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 340 | 57.94% | 42.06% |
| Indica II | 189 | 43.92% | 56.08% |
| Indica Intermediate | 193 | 47.15% | 52.85% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117281671 | A->G | INTERGENIC | None |