Detailed information of SNP:
|
SNP ID:
sf0117289776(Gbrowse)
Chromosome: chr01 Position: 17289776 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1233 | 71.21% | 28.79% |
| All Indica | 746 | 90.88% | 9.12% |
| All Japonica | 374 | 38.50% | 61.50% |
| Aus | 61 | 52.46% | 47.54% |
| Indica I | 353 | 97.45% | 2.55% |
| Indica II | 200 | 80.50% | 19.50% |
| Indica Intermediate | 193 | 89.64% | 10.36% |
| Temperate Japonica | 247 | 51.82% | 48.18% |
| Tropical Japonica | 78 | 8.97% | 91.03% |
| Japonica Intermediate | 49 | 18.37% | 81.63% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117289776 | T->C | INTERGENIC | None |