Detailed information of SNP:
|
SNP ID:
sf0117359525(Gbrowse)
Chromosome: chr01 Position: 17359525 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 53.59% | 46.41% |
| All Indica | 740 | 87.57% | 12.43% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 62 | 61.29% | 38.71% |
| Indica I | 352 | 85.80% | 14.20% |
| Indica II | 197 | 94.92% | 5.08% |
| Indica Intermediate | 191 | 83.25% | 16.75% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117359525 | A->G | LOC_Os01g31714(LOC_Os01g31714.1) | INTRON |