Detailed information of SNP:
|
SNP ID:
sf0117361742(Gbrowse)
Chromosome: chr01 Position: 17361742 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 96.80% | 3.20% |
| All Indica | 755 | 94.17% | 5.83% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 95.90% | 4.10% |
| Indica II | 185 | 91.35% | 8.65% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117361742 | G->T | INTERGENIC | None |