Detailed information of SNP:
|
SNP ID:
sf0117430676(Gbrowse)
Chromosome: chr01 Position: 17430676 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1290 | 90.93% | 9.07% |
| All Indica | 692 | 85.40% | 14.60% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 56 | 82.14% | 17.86% |
| Indica I | 325 | 89.23% | 10.77% |
| Indica II | 184 | 79.89% | 20.11% |
| Indica Intermediate | 183 | 84.15% | 15.85% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117430676 | A->G | INTERGENIC | None |