Detailed information of SNP:
|
SNP ID:
sf0117518852(Gbrowse)
Chromosome: chr01 Position: 17518852 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 86.66% | 13.34% |
| All Indica | 726 | 77.69% | 22.31% |
| All Japonica | 492 | 98.78% | 1.22% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 335 | 72.54% | 27.46% |
| Indica II | 207 | 98.07% | 1.93% |
| Indica Intermediate | 184 | 64.13% | 35.87% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117518852 | C->T | INTERGENIC | None |