Detailed information of SNP:
|
SNP ID:
sf0117631008(Gbrowse)
Chromosome: chr01 Position: 17631008 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 74.83% | 25.17% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 441 | 42.63% | 57.37% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 293 | 54.95% | 45.05% |
| Tropical Japonica | 86 | 9.30% | 90.70% |
| Japonica Intermediate | 62 | 30.65% | 69.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117631008 | A->G | LOC_Os01g32210(LOC_Os01g32210.1) | Non-Synonymous SNP |