Detailed information of SNP:
|
SNP ID:
sf0117664306(Gbrowse)
Chromosome: chr01 Position: 17664306 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.92% | 20.08% |
| All Indica | 799 | 67.96% | 32.04% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117664306 | G->A | INTERGENIC | None |