Detailed information of SNP:
|
SNP ID:
sf0117731514(Gbrowse)
Chromosome: chr01 Position: 17731514 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 95.04% | 4.96% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117731514 | C->T | LOC_Os01g32320(LOC_Os01g32320.1) | Non-Synonymous SNP |