Detailed information of SNP:
|
SNP ID:
sf0117777368(Gbrowse)
Chromosome: chr01 Position: 17777368 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 56.21% | 43.79% |
| All Indica | 759 | 28.59% | 71.41% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 355 | 35.21% | 64.79% |
| Indica II | 203 | 21.67% | 78.33% |
| Indica Intermediate | 201 | 23.88% | 76.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117777368 | T->A | INTERGENIC | None |