Detailed information of SNP:
|
SNP ID:
sf0117783542(Gbrowse)
Chromosome: chr01 Position: 17783542 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.65% | 25.35% |
| All Indica | 796 | 59.17% | 40.83% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 63.54% | 36.46% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117783542 | A->T | INTERGENIC | None |