Detailed information of SNP:
|
SNP ID:
sf0117819775(Gbrowse)
Chromosome: chr01 Position: 17819775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1184 | 91.72% | 8.28% |
| All Indica | 596 | 84.06% | 15.94% |
| All Japonica | 487 | 99.79% | 0.21% |
| Aus | 51 | 96.08% | 3.92% |
| Indica I | 289 | 81.66% | 18.34% |
| Indica II | 167 | 92.81% | 7.19% |
| Indica Intermediate | 140 | 78.57% | 21.43% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117819775 | C->T | LOC_Os01g32500(LOC_Os01g32500.1) | Synonymous |