Detailed information of SNP:
|
SNP ID:
sf0117839889(Gbrowse)
Chromosome: chr01 Position: 17839889 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 80.63% | 19.37% |
| All Indica | 754 | 68.17% | 31.83% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 358 | 70.67% | 29.33% |
| Indica II | 197 | 75.13% | 24.87% |
| Indica Intermediate | 199 | 56.78% | 43.22% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117839889 | A->T | INTERGENIC | None |