Detailed information of SNP:
|
SNP ID:
sf0117910439(Gbrowse)
Chromosome: chr01 Position: 17910439 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 62.32% | 37.68% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 492 | 3.05% | 96.95% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117910439 | T->C | INTERGENIC | None |