Detailed information of SNP:
|
SNP ID:
sf0117968687(Gbrowse)
Chromosome: chr01 Position: 17968687 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1269 | 88.42% | 11.58% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 359 | 60.17% | 39.83% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 216 | 40.74% | 59.26% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 73.21% | 26.79% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117968687 | A->G | LOC_Os01g32760(LOC_Os01g32760.1) | Non-Synonymous SNP |