Detailed information of SNP:
|
SNP ID:
sf0117971358(Gbrowse)
Chromosome: chr01 Position: 17971358 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 63.11% | 36.89% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117971358 | G->C | INTERGENIC | None |