Detailed information of SNP:
|
SNP ID:
sf0117982832(Gbrowse)
Chromosome: chr01 Position: 17982832 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.23% | 38.77% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0117982832 | A->G | INTERGENIC | None |