Detailed information of SNP:
|
SNP ID:
sf0118033198(Gbrowse)
Chromosome: chr01 Position: 18033198 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 97.72% | 2.28% |
| All Indica | 789 | 96.83% | 3.17% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118033198 | G->A | LOC_Os01g32864(LOC_Os01g32864.1) | INTRON |