Detailed information of SNP:
|
SNP ID:
sf0118066077(Gbrowse)
Chromosome: chr01 Position: 18066077 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 98.16% | 1.84% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118066077 | C->A | INTERGENIC | None |