Detailed information of SNP:
|
SNP ID:
sf0118079287(Gbrowse)
Chromosome: chr01 Position: 18079287 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 95.96% | 4.04% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 89.25% | 10.75% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 90.39% | 9.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118079287 | C->T | INTERGENIC | None |