Detailed information of SNP:
|
SNP ID:
sf0118082715(Gbrowse)
Chromosome: chr01 Position: 18082715 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 55.87% | 44.13% |
| All Indica | 796 | 90.08% | 9.92% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118082715 | G->A | INTERGENIC | None |