Detailed information of SNP:
|
SNP ID:
sf0118114232(Gbrowse)
Chromosome: chr01 Position: 18114232 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 88.74% | 11.26% |
| All Indica | 760 | 92.11% | 7.89% |
| All Japonica | 491 | 81.87% | 18.13% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 356 | 91.57% | 8.43% |
| Indica II | 203 | 95.07% | 4.93% |
| Indica Intermediate | 201 | 90.05% | 9.95% |
| Temperate Japonica | 331 | 75.53% | 24.47% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118114232 | A->G | INTERGENIC | None |