Detailed information of SNP:



SNP ID: sf0118123295(Gbrowse)

Chromosome: chr01

Position: 18123295
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1241 89.77% 10.23%
All Indica796 100.00% 0.00%
All Japonica332 63.25% 36.75%
Aus65 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 100.00% 0.00%
Indica Intermediate209 100.00% 0.00%
Temperate Japonica207 45.41% 54.59%
Tropical Japonica75 98.67% 1.33%
Japonica Intermediate50 84.00% 16.00%
Group VI/Aromatic12 83.33% 16.67%
Intermediate36 91.67% 8.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0118123295 T->G INTERGENIC None