Detailed information of SNP:
|
SNP ID:
sf0118203498(Gbrowse)
Chromosome: chr01 Position: 18203498 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 59.14% | 40.86% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118203498 | C->T | INTERGENIC | None |