Detailed information of SNP:
|
SNP ID:
sf0118218599(Gbrowse)
Chromosome: chr01 Position: 18218599 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 91.08% | 8.92% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 429 | 79.25% | 20.75% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 285 | 92.63% | 7.37% |
| Tropical Japonica | 84 | 33.33% | 66.67% |
| Japonica Intermediate | 60 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118218599 | T->C | INTERGENIC | None |