Detailed information of SNP:
|
SNP ID:
sf0118244354(Gbrowse)
Chromosome: chr01 Position: 18244354 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 61.88% | 38.12% |
| All Indica | 790 | 92.91% | 7.09% |
| All Japonica | 496 | 12.90% | 87.10% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 207 | 90.82% | 9.18% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118244354 | A->G | LOC_Os01g33136(LOC_Os01g33136.1) | INTRON |