Detailed information of SNP:
|
SNP ID:
sf0118245172(Gbrowse)
Chromosome: chr01 Position: 18245172 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 65.30% | 34.70% |
| All Indica | 794 | 46.73% | 53.27% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118245172 | A->T | INTERGENIC | None |