Detailed information of SNP:
|
SNP ID:
sf0118268715(Gbrowse)
Chromosome: chr01 Position: 18268715 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 77.28% | 22.72% |
| All Indica | 795 | 66.92% | 33.08% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 373 | 58.18% | 41.82% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118268715 | A->G | INTERGENIC | None |