Detailed information of SNP:
|
SNP ID:
sf0118269944(Gbrowse)
Chromosome: chr01 Position: 18269944 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 60.13% | 39.87% |
| All Indica | 782 | 36.83% | 63.17% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 365 | 21.10% | 78.90% |
| Indica II | 210 | 58.57% | 41.43% |
| Indica Intermediate | 207 | 42.51% | 57.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118269944 | G->A | INTERGENIC | None |