Detailed information of SNP:
|
SNP ID:
sf0118368405(Gbrowse)
Chromosome: chr01 Position: 18368405 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 85.97% | 14.03% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 442 | 58.82% | 41.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 290 | 46.21% | 53.79% |
| Tropical Japonica | 89 | 91.01% | 8.99% |
| Japonica Intermediate | 63 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118368405 | A->G | INTERGENIC | None |