Detailed information of SNP:
|
SNP ID:
sf0118424758(Gbrowse)
Chromosome: chr01 Position: 18424758 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 96.06% | 3.94% |
| All Indica | 777 | 93.56% | 6.44% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 367 | 89.92% | 10.08% |
| Indica II | 204 | 97.06% | 2.94% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118424758 | G->A | LOC_Os01g33460(LOC_Os01g33460.1) | Synonymous |