Detailed information of SNP:
|
SNP ID:
sf0118430998(Gbrowse)
Chromosome: chr01 Position: 18430998 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 62.14% | 37.86% |
| All Indica | 782 | 37.21% | 62.79% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 370 | 41.89% | 58.11% |
| Indica II | 206 | 25.73% | 74.27% |
| Indica Intermediate | 206 | 40.29% | 59.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118430998 | T->C | LOC_Os01g33470(LOC_Os01g33470.1) | Synonymous |