Detailed information of SNP:
|
SNP ID:
sf0118432227(Gbrowse)
Chromosome: chr01 Position: 18432227 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 58.12% | 41.88% |
| All Indica | 765 | 31.76% | 68.24% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 360 | 35.83% | 64.17% |
| Indica II | 202 | 19.80% | 80.20% |
| Indica Intermediate | 203 | 36.45% | 63.55% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118432227 | A->G | LOC_Os01g33470(LOC_Os01g33470.1) | Synonymous |