Detailed information of SNP:
|
SNP ID:
sf0118433062(Gbrowse)
Chromosome: chr01 Position: 18433062 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 96.08% | 3.92% |
| All Indica | 716 | 92.74% | 7.26% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 320 | 96.56% | 3.44% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 186 | 93.55% | 6.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118433062 | G->A | INTERGENIC | None |