Detailed information of SNP:
|
SNP ID:
sf0118444148(Gbrowse)
Chromosome: chr01 Position: 18444148 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.21% | 36.79% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 12.07% | 87.93% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118444148 | T->C | INTERGENIC | None |