Detailed information of SNP:
|
SNP ID:
sf0118488756(Gbrowse)
Chromosome: chr01 Position: 18488756 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 61.56% | 38.44% |
| All Indica | 796 | 95.73% | 4.27% |
| All Japonica | 491 | 6.92% | 93.08% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 90 | 18.89% | 81.11% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118488756 | G->A | INTERGENIC | None |