Detailed information of SNP:
|
SNP ID:
sf0118503088(Gbrowse)
Chromosome: chr01 Position: 18503088 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.57% | 38.43% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118503088 | C->T | INTERGENIC | None |