Detailed information of SNP:
|
SNP ID:
sf0118564746(Gbrowse)
Chromosome: chr01 Position: 18564746 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 57.19% | 42.81% |
| All Indica | 769 | 30.30% | 69.70% |
| All Japonica | 494 | 94.74% | 5.26% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 360 | 25.00% | 75.00% |
| Indica II | 207 | 45.41% | 54.59% |
| Indica Intermediate | 202 | 24.26% | 75.74% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118564746 | C->T | LOC_Os01g33740(LOC_Os01g33740.1) | Non-Synonymous SNP |