Detailed information of SNP:
|
SNP ID:
sf0118594789(Gbrowse)
Chromosome: chr01 Position: 18594789 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.32% | 39.68% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118594789 | T->C | LOC_Os01g33784(LOC_Os01g33784.1) | INTRON |