Detailed information of SNP:
|
SNP ID:
sf0118656027(Gbrowse)
Chromosome: chr01 Position: 18656027 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.95% | 39.05% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0118656027 | T->C | INTERGENIC | None |